Namespace calcElementsDrawAreas

Defined in: naview.js.

Namespace Summary
Constructor Attributes	Constructor Name and Description
	calcElementsDrawAreas Function organizes protein element order for generating draw areas for every protein and membrane elements.

Namespace Detail

calcElementsDrawAreas

Function organizes protein element order for generating draw areas for every protein and membrane elements.

Parameters:
{Array} array_data: data generated from processRawUniProt
{Object} svg_drawing_area: SVG draw area with borders and membrane main coords
{Array} domain_names: list of names for each domain(I,II,III,IV)
{Object} helices_and_pores_by_domain: dictionary for helices and pore elements according to their domain names (I,II,III,IV)
{Object} internal_short_loops_by_domain: dictionary for loops connecting helices and pore elements according to their domain names (I,II,III,IV)
{Object} long_loops_by_prevdomain: dictionary for interdomain loop elements according to their previous domain names (I,II,III)
{Function} longLoopWidthF: scale function for calculating the interdomain loops width from distributeLongLoopsWidth
{number} total_domain_width: total plot width for domain objects
{number} inter_domain_width: total plot width for interdomain objects

See:: calculateDrawAreaMembrane; calculateDrawAreaTermini; calculateDrawAreaHelicesPoresByDomain; indexDrawAreas; calculateDrawAreaLongLoops

Classes