Namespace processRawUniProt
Defined in: naview.js.
| Constructor Attributes | Constructor Name and Description |
|---|---|
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Parses a UniProt formatted text string
to the required data format for plotting a NaV channel.
|
Namespace Detail
processRawUniProt
Parses a UniProt formatted text string
to the required data format for plotting a NaV channel.
Required line types include:
1. The FT (Feature Table) lines for:
a) TOPO_DOM - Topological domain
b) TRANSMEM - Extent of a transmembrane region
c) INTRAMEM - Extent of a region located in a membrane without crossing it
d) CHAIN - Extent of a polypeptide chain in the mature protein.
e) REPEAT - Extent of an internal sequence repetition.
2. The SQ (SeQuence header) lines
Required line types include:
1. The FT (Feature Table) lines for:
a) TOPO_DOM - Topological domain
b) TRANSMEM - Extent of a transmembrane region
c) INTRAMEM - Extent of a region located in a membrane without crossing it
d) CHAIN - Extent of a polypeptide chain in the mature protein.
e) REPEAT - Extent of an internal sequence repetition.
2. The SQ (SeQuence header) lines
- Parameters:
- {string} test_raw_protein
- UniProt text formatted object with needed FT and SQ lines
- See:
- for information on the UniProt text format